Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_38130 | Not Available | Positive | 3826787 - 3827722 | 36193.1 |
| thioredoxin | shim_38140 | P08058 | Negative | 3827779 - 3828099 | 11109.1 |
| atp-dependent helicase/nuclease subunit a | shim_38150 | Q03NA7 | Negative | 3828142 - 3831540 | 124793.0 |
| pd-(d/e)xk nuclease superfamily protein | shim_38160 | Not Available | Negative | 3831537 - 3834464 | 108651.0 |
| bifunctional protein glmu | shim_38170 | Q9A2M1 | Negative | 3834457 - 3835125 | 23801.5 |
| phosphotransferase enzyme family protein | shim_38180 | Q9A2M2 | Negative | 3835125 - 3836144 | 38005.6 |
| trna threonylcarbamoyladenosine biosynthesis protein tsae | shim_38190 | Q1RGZ7 | Negative | 3836137 - 3836601 | 16937.2 |
| sensor protein divl | shim_38200 | Not Available | Negative | 3836639 - 3838129 | 54697.7 |
| sensor histidine kinase regb | shim_38210 | P0C0Z0 | Negative | 3838214 - 3839587 | 50668.7 |
| sco1/senc | shim_38220 | Q52720 | Positive | 3839672 - 3840301 | 22987.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
