Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein-export protein secb | shim_38030 | Q5LLN4 | Negative | 3818004 - 3818486 | 18090.5 |
| phage t7 f exclusion suppressor fxsa | shim_38040 | Not Available | Negative | 3818544 - 3819056 | 18305.2 |
| tim44-like domain protein | shim_38050 | Not Available | Positive | 3819161 - 3819817 | 23752.1 |
| membrane-bound lytic murein transglycosylase a precursor | shim_38060 | Not Available | Positive | 3819814 - 3820851 | 37885.4 |
| hypothetical protein | shim_38070 | Not Available | Positive | 3820848 - 3821426 | 21403.1 |
| putative 3-hydroxyphenylpropionic transporter mhpt | shim_38080 | Not Available | Negative | 3821423 - 3822649 | 43610.3 |
| hypothetical protein | shim_38090 | Not Available | Negative | 3822646 - 3823824 | 43545.6 |
| atp-dependent protease atpase subunit hslu | shim_38100 | Q1GCN3 | Negative | 3823821 - 3825131 | 48245.8 |
| l-glyceraldehyde 3-phosphate reductase | shim_38110 | Not Available | Negative | 3825128 - 3826162 | 37475.6 |
| atp-dependent protease subunit hslv | shim_38120 | Q5LLP2 | Negative | 3826159 - 3826716 | 19505.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
