Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ubiquinone biosynthesis o-methyltransferase | shim_03470 | Q1GCH8 | Negative | 339875 - 340645 | 27934.5 |
| proline iminopeptidase | shim_03480 | O32449 | Positive | 340675 - 341649 | 36466.3 |
| periplasmic dipeptide transport protein precursor | shim_03490 | Not Available | Positive | 341726 - 343213 | 52880.4 |
| ribosome maturation factor rimp | shim_03500 | Q1GCH5 | Positive | 343357 - 343947 | 21520.4 |
| hypothetical protein | shim_03510 | Q92HF4 | Positive | 343953 - 345575 | 60209.0 |
| hypothetical protein | shim_03520 | Not Available | Positive | 345598 - 346230 | 22589.4 |
| translation initiation factor if-2 | shim_03530 | Q1GCH2 | Positive | 346227 - 348725 | 89393.9 |
| 8-oxo-dgtp diphosphatase | shim_03540 | P08337 | Negative | 349071 - 349385 | 11894.3 |
| arginine biosynthesis bifunctional protein argj | shim_03550 | Q5LWL6 | Negative | 349466 - 350692 | 42428.1 |
| putative parvulin-type peptidyl-prolyl cis-trans isomerase precursor | shim_03560 | Q8CXK4 | Negative | 350695 - 351564 | 31279.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
