Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribokinase | shim_37830 | A1A6H3 | Negative | 3798124 - 3798993 | 29966.7 |
| dna mismatch repair protein muts | shim_37840 | Q1GCK9 | Positive | 3799126 - 3801768 | 95186.7 |
| hypothetical protein | shim_37850 | P55140 | Negative | 3801772 - 3802824 | 39070.8 |
| protein grpe | shim_37860 | Q3IYI4 | Negative | 3802878 - 3803438 | 20890.5 |
| heat-inducible transcription repressor hrca | shim_37870 | B3PZA3 | Negative | 3803448 - 3804512 | 38522.8 |
| ribonuclease ph | shim_37880 | Q16D02 | Positive | 3804629 - 3805345 | 25283.4 |
| non-canonical purine ntp pyrophosphatase | shim_37890 | Q5LWF7 | Positive | 3805342 - 3805953 | 22225.3 |
| oxygen-independent coproporphyrinogen-iii oxidase 1 | shim_37900 | A5D7B1 | Positive | 3805946 - 3807103 | 43325.1 |
| inner membrane protein yban | shim_37910 | P0AAR6 | Positive | 3807104 - 3807457 | 12843.5 |
| chromosome-partitioning protein parb | shim_37920 | P0CAV8 | Negative | 3807447 - 3808337 | 32846.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
