Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional hemolysin/adenylate cyclase precursor | shim_37730 | Not Available | Positive | 3787322 - 3790345 | 101417.0 |
| hypothetical protein | shim_37740 | Not Available | Positive | 3790465 - 3791013 | 20865.1 |
| sulfotransferase domain protein | shim_37750 | Not Available | Positive | 3791068 - 3791931 | 33991.1 |
| glucose-1-phosphate thymidylyltransferase 1 | shim_37760 | B0RVK9 | Negative | 3791990 - 3792865 | 31912.2 |
| dtdp-4-dehydrorhamnose reductase | shim_37770 | P55463 | Negative | 3792867 - 3793829 | 33793.7 |
| dtdp-glucose 4,6-dehydratase 2 | shim_37780 | P55294 | Negative | 3793798 - 3794847 | 38618.3 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | shim_37790 | P55468 | Negative | 3794847 - 3795410 | 20749.2 |
| hypothetical protein | shim_37800 | Not Available | Negative | 3795537 - 3796253 | 26714.8 |
| branched-chain-amino-acid aminotransferase | shim_37810 | Q9ASR4 | Negative | 3796312 - 3797220 | 33088.6 |
| peptide methionine sulfoxide reductase msra 2 | shim_37820 | Q9A9E9 | Positive | 3797386 - 3798048 | 24232.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
