Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system protein d precursor | shim_37630 | P35818 | Positive | 3774345 - 3776285 | 68890.6 |
| putative type ii secretion system protein e | shim_37640 | Q01566 | Positive | 3776227 - 3777750 | 54351.8 |
| type ii secretion system protein f | shim_37650 | Q00513 | Positive | 3777747 - 3778961 | 42922.7 |
| alginate biosynthesis protein alga | shim_37660 | B0RVK6 | Negative | 3778980 - 3780416 | 51353.0 |
| udp-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase | shim_37670 | B3FN88 | Positive | 3780766 - 3781368 | 23027.3 |
| polysialic acid transport atp-binding protein kpst | shim_37680 | P24586 | Negative | 3781510 - 3782208 | 25473.6 |
| hypothetical protein | shim_37690 | Not Available | Negative | 3782205 - 3783488 | 48062.6 |
| polysialic acid transport protein kpsm | shim_37700 | P24584 | Positive | 3783665 - 3784492 | 31197.3 |
| glycosyl transferases group 1 | shim_37710 | Not Available | Negative | 3784483 - 3785727 | 46432.2 |
| glycosyl transferases group 1 | shim_37720 | Not Available | Negative | 3785724 - 3787049 | 49557.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
