Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| leader peptidase pppa | shim_37530 | E3PJ89 | Negative | 3767523 - 3768308 | 27424.7 |
| type ii secretion system protein g precursor | shim_37540 | Q00514 | Positive | 3768409 - 3768873 | 16358.2 |
| hypothetical protein | shim_37550 | Not Available | Positive | 3768870 - 3769331 | 16273.5 |
| hypothetical protein | shim_37560 | Not Available | Positive | 3769316 - 3769723 | 13888.9 |
| type ii secretion system protein j precursor | shim_37570 | Not Available | Positive | 3769720 - 3770385 | 23506.2 |
| general secretion pathway protein k | shim_37580 | Q00518 | Positive | 3770382 - 3771296 | 33026.6 |
| gspl-like protein | shim_37590 | Not Available | Positive | 3771310 - 3772422 | 39624.3 |
| general secretion pathway, m protein | shim_37600 | Not Available | Positive | 3772419 - 3772910 | 17711.4 |
| hypothetical protein | shim_37610 | Not Available | Negative | 3772941 - 3773474 | 18537.6 |
| hypothetical protein | shim_37620 | Not Available | Positive | 3773614 - 3774102 | 16885.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
