Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_37430 | Not Available | Negative | 3753355 - 3754449 | 38072.0 |
| putative glycosyltransferase epse | shim_37440 | P37783 | Positive | 3754645 - 3755616 | 35439.2 |
| hypothetical protein | shim_37450 | Not Available | Positive | 3755890 - 3756258 | 13085.3 |
| serralysin c precursor | shim_37460 | P16317 | Positive | 3756310 - 3758850 | 85613.5 |
| fg-gap repeat protein | shim_37470 | Not Available | Negative | 3758907 - 3761960 | 108449.0 |
| sulfotransferase domain protein | shim_37480 | Q9Y663 | Positive | 3762103 - 3762861 | 29461.4 |
| hypothetical protein | shim_37490 | Not Available | Negative | 3762936 - 3764075 | 40522.1 |
| hypothetical protein | shim_37500 | Not Available | Negative | 3764137 - 3764568 | 15360.9 |
| localization factor podjl | shim_37510 | Not Available | Negative | 3764719 - 3765885 | 41240.9 |
| putative beta-lactamase hcpc precursor | shim_37520 | Not Available | Negative | 3765882 - 3767492 | 56991.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
