Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formyl-coenzyme a transferase | shim_37130 | A9X6P9 | Negative | 3725617 - 3726810 | 41952.6 |
| aldehyde dehydrogenase, thermostable | shim_37140 | P42329 | Negative | 3726807 - 3728255 | 50973.8 |
| hypothetical protein | shim_37150 | Not Available | Negative | 3728252 - 3728941 | 25575.7 |
| proclavaminate amidinohydrolase | shim_37160 | P73270 | Negative | 3728941 - 3729939 | 35685.3 |
| agmatinase | shim_37170 | Not Available | Negative | 3729936 - 3730811 | 31111.1 |
| arginase family protein | shim_37180 | Not Available | Negative | 3730811 - 3731485 | 23239.9 |
| formimidoylglutamase | shim_37190 | Not Available | Negative | 3731478 - 3732248 | 26975.4 |
| hth-type transcriptional regulator kipr | shim_37200 | Not Available | Positive | 3732334 - 3733041 | 25255.4 |
| trehalose transport system permease protein sugb | shim_37210 | Not Available | Negative | 3733050 - 3733853 | 28848.7 |
| putrescine transport system permease protein poth | shim_37220 | Not Available | Negative | 3733864 - 3734766 | 33179.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
