Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| autoinducer 2 sensor kinase/phosphatase luxq | shim_37030 | Q9HUI3 | Positive | 3714683 - 3716056 | 49979.2 |
| tryptophan synthase alpha chain | shim_37040 | Q5LV87 | Negative | 3716209 - 3717000 | 27265.7 |
| hypothetical protein | shim_37050 | Not Available | Negative | 3717187 - 3717600 | 15013.8 |
| ribosome-binding atpase ychf | shim_37060 | P44681 | Positive | 3717697 - 3718794 | 39501.9 |
| hypothetical protein | shim_37070 | O55767 | Positive | 3718870 - 3719856 | 38083.9 |
| bifunctional polymyxin resistance protein arna | shim_37080 | Q6GMI9 | Positive | 3719862 - 3720821 | 34586.0 |
| Trna-ser | Not Available | Not Available | Positive | 3720904 - 3720993 | Not Available |
| phage integrase family protein | shim_37100 | Not Available | Positive | 3721133 - 3722446 | 49348.8 |
| hypothetical protein | shim_37110 | Not Available | Negative | 3722943 - 3724484 | 57438.9 |
| citrate synthase 1 | shim_37120 | Not Available | Negative | 3724808 - 3725620 | 29135.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
