Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6-aminohexanoate-dimer hydrolase | shim_36930 | P07062 | Negative | 3705658 - 3706824 | 42355.7 |
| hypothetical protein | shim_36940 | Not Available | Negative | 3706891 - 3707955 | 38659.6 |
| peptidyl-trna hydrolase | shim_36950 | Q5LV91 | Negative | 3707952 - 3708662 | 26030.2 |
| protein-l-isoaspartate o-methyltransferase | shim_36960 | Not Available | Positive | 3708753 - 3709442 | 24822.2 |
| acetyltransferase (gnat) family protein | shim_36970 | Not Available | Positive | 3709448 - 3710005 | 20407.7 |
| putative peptidase | shim_36980 | Not Available | Negative | 3710069 - 3711238 | 42812.9 |
| 50s ribosomal protein l25 | shim_36990 | Q28L99 | Negative | 3711366 - 3712013 | 23145.5 |
| hypothetical protein | shim_37000 | Not Available | Negative | 3712144 - 3712758 | 23539.4 |
| l-lactate dehydrogenase (cytochrome) | shim_37010 | Q7VPI9 | Negative | 3712827 - 3713993 | 42568.2 |
| heme no binding protein | shim_37020 | Not Available | Positive | 3714138 - 3714683 | 20483.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
