Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l,d-transpeptidase catalytic domain | shim_03370 | Not Available | Positive | 333465 - 333959 | 18792.4 |
| cysteine-rich secretory protein family protein | shim_03380 | Not Available | Negative | 333960 - 334487 | 19000.4 |
| putative l,d-transpeptidase erfk/srfk precursor | shim_03390 | Not Available | Positive | 334658 - 335257 | 22461.6 |
| hypothetical protein | shim_03400 | Not Available | Positive | 335407 - 335586 | 5777.12 |
| ferrochelatase | shim_03410 | Q59735 | Negative | 335654 - 336709 | 39797.2 |
| hypothetical protein | shim_03420 | O80543 | Negative | 336737 - 337555 | 29972.3 |
| ribose-phosphate pyrophosphokinase | shim_03430 | P46846 | Positive | 337568 - 338302 | 26524.2 |
| glutaredoxin-3 | shim_03440 | Q9HU55 | Positive | 338339 - 338596 | 9207.04 |
| 2-oxoglutaramate amidase | shim_03450 | P0DP68 | Positive | 338602 - 339432 | 29945.5 |
| marr family protein | shim_03460 | Not Available | Positive | 339432 - 339872 | 16349.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
