Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s1 | shim_36830 | Q6NDP1 | Positive | 3697371 - 3699050 | 61336.7 |
| smi1 / knr4 family protein | shim_36840 | Not Available | Positive | 3699228 - 3699623 | 14695.3 |
| methylisocitrate lyase | shim_36850 | Not Available | Negative | 3699660 - 3700430 | 26738.8 |
| bifunctional transcriptional activator/dna repair enzyme ada | shim_36860 | Not Available | Negative | 3700427 - 3701500 | 39316.1 |
| integration host factor subunit beta | shim_36870 | Q1GK81 | Positive | 3701834 - 3702115 | 10686.8 |
| hypothetical protein | shim_36880 | Not Available | Positive | 3702119 - 3702469 | 13070.3 |
| n-(5'-phosphoribosyl)anthranilate isomerase | shim_36890 | Q28LA8 | Positive | 3702508 - 3703179 | 23377.3 |
| tryptophan synthase beta chain | shim_36900 | Q1GK77 | Positive | 3703343 - 3704599 | 45719.6 |
| hypothetical protein | shim_36910 | Not Available | Positive | 3704759 - 3705082 | 11866.5 |
| hypothetical protein | shim_36920 | Not Available | Negative | 3705095 - 3705475 | 13592.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
