Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sodium bile acid symporter family protein | shim_36730 | Q93YR2 | Positive | 3688295 - 3689155 | 29546.0 |
| trna (guanine-n(7)-)-methyltransferase | shim_36740 | Q1GK88 | Positive | 3689218 - 3689940 | 27703.8 |
| hypothetical protein | shim_36750 | Not Available | Negative | 3689945 - 3690790 | 30728.6 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | shim_36760 | Q161H2 | Positive | 3691036 - 3692382 | 46522.9 |
| cytidylate kinase | shim_36770 | Q9X4E0 | Positive | 3692387 - 3692995 | 20884.9 |
| hth-type transcriptional activator hxlr | shim_36780 | Not Available | Negative | 3693000 - 3693389 | 14701.6 |
| putative nad(p)h nitroreductase | shim_36790 | Q8CN23 | Positive | 3693534 - 3694169 | 23763.4 |
| hypothetical protein | shim_36800 | Not Available | Positive | 3694295 - 3694540 | 9082.98 |
| hypothetical protein | shim_36810 | Not Available | Negative | 3694909 - 3695232 | 12080.3 |
| gamma-butyrobetaine dioxygenase | shim_36820 | P80193 | Negative | 3695631 - 3696752 | 41170.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
