Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_36630 | Not Available | Negative | 3678572 - 3679504 | 36244.8 |
| (dimethylallyl)adenosine trna methylthiotransferase miab | shim_36640 | Q1GK98 | Positive | 3679565 - 3680902 | 49617.3 |
| outer membrane porin f precursor | shim_36650 | Not Available | Positive | 3681132 - 3681707 | 20848.9 |
| hypothetical protein | shim_36660 | Not Available | Positive | 3681720 - 3682016 | 10184.1 |
| phoh-like protein | shim_36670 | P0A9K5 | Positive | 3682185 - 3683225 | 38132.1 |
| endoribonuclease ybey | shim_36680 | Q5LLL4 | Positive | 3683275 - 3683766 | 17736.8 |
| hemolysin c | shim_36690 | Q92GI2 | Positive | 3683797 - 3684681 | 32047.4 |
| apolipoprotein n-acyltransferase | shim_36700 | P61036 | Positive | 3684674 - 3686206 | 55108.2 |
| s-adenosylmethionine synthase | shim_36710 | Q5LLL2 | Positive | 3686300 - 3687481 | 42513.8 |
| hypothetical protein | shim_36720 | Not Available | Negative | 3687659 - 3687919 | 9548.73 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
