Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| (s)-2-haloacid dehalogenase | shim_36530 | P24069 | Negative | 3669868 - 3670551 | 24954.3 |
| fkbp-type peptidyl-prolyl cis-trans isomerase slyd | shim_36540 | O52980 | Positive | 3670691 - 3671119 | 15159.8 |
| nitronate monooxygenase | shim_36550 | B2TEK6 | Positive | 3671217 - 3672290 | 36374.5 |
| enoyl-(acyl-carrier-protein) reductase (nadh) fabi | shim_36560 | P58381 | Negative | 3672308 - 3673099 | 27991.3 |
| 3-oxoacyl-(acyl-carrier-protein) synthase 1 | shim_36570 | P43710 | Negative | 3673107 - 3674336 | 42321.4 |
| carnitinyl-coa dehydratase | shim_36580 | Q5LLW6 | Negative | 3674461 - 3675267 | 28799.3 |
| 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase | shim_36590 | A6WWV7 | Negative | 3675543 - 3676049 | 18401.6 |
| peroxide-responsive repressor perr | shim_36600 | Q99T18 | Positive | 3676246 - 3676662 | 15341.0 |
| phthiocerol synthesis polyketide synthase type i ppsc | shim_36610 | Not Available | Positive | 3676757 - 3677743 | 33816.9 |
| hypothetical protein | shim_36620 | Not Available | Negative | 3677771 - 3678541 | 28484.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
