Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uvrabc system protein c | shim_36130 | Q5LMC7 | Positive | 3628381 - 3630255 | 69044.8 |
| tyrosine recombinase xerd | shim_36140 | Q92LK1 | Negative | 3630266 - 3631180 | 32692.6 |
| hypothetical protein | shim_36150 | Not Available | Negative | 3631177 - 3631887 | 26173.2 |
| primosomal protein n' | shim_36160 | P05445 | Positive | 3632077 - 3634284 | 80096.8 |
| major facilitator superfamily protein | shim_36170 | Not Available | Positive | 3634362 - 3635675 | 48394.6 |
| multidrug export protein mepa | shim_36180 | Not Available | Positive | 3635679 - 3637046 | 47614.7 |
| ribosomal protein l11 methyltransferase | shim_36190 | B2S6P1 | Positive | 3637077 - 3637946 | 30255.0 |
| hypothetical protein | shim_36200 | Not Available | Positive | 3638214 - 3638561 | 12897.8 |
| hypothetical protein | shim_36210 | Not Available | Negative | 3638733 - 3638921 | 6619.71 |
| crossover junction endodeoxyribonuclease ruvc | shim_36220 | A3PLU5 | Positive | 3639254 - 3639760 | 17447.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
