Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_36030 | Not Available | Negative | 3619040 - 3619495 | 16320.2 |
| hypothetical protein | shim_36040 | Not Available | Negative | 3619584 - 3620342 | 27494.7 |
| 3-ketoacyl-coa thiolase | shim_36050 | O32177 | Negative | 3620452 - 3621654 | 42145.9 |
| putative enoyl-coa hydratase 1 | shim_36060 | P25200 | Negative | 3621746 - 3622228 | 17573.1 |
| carbon monoxide dehydrogenase subunit g (coxg) | shim_36070 | Not Available | Positive | 3622789 - 3623307 | 17730.0 |
| doxorubicin resistance atp-binding protein drra | shim_36080 | P36879 | Positive | 3623498 - 3624427 | 33611.7 |
| inner membrane transport permease yadh | shim_36090 | P0AFN8 | Positive | 3624424 - 3625185 | 27798.8 |
| putative protease sohb | shim_36100 | Q8YFI5 | Positive | 3625250 - 3626083 | 30116.2 |
| inner membrane protein yrbg | shim_36110 | Q0ZAI3 | Positive | 3626257 - 3627213 | 33971.6 |
| 3-oxoacyl-(acyl-carrier-protein) reductase fabg | shim_36120 | Q49117 | Positive | 3627236 - 3628015 | 27374.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
