Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yqey-like protein | shim_35930 | Not Available | Positive | 3607757 - 3608221 | 16849.2 |
| bifunctional hemolysin/adenylate cyclase precursor | shim_35940 | Not Available | Negative | 3608299 - 3609612 | 44075.1 |
| phytanoyl-coa dioxygenase (phyh) | shim_35950 | Not Available | Negative | 3609737 - 3610534 | 29918.0 |
| pca regulon regulatory protein | shim_35960 | Not Available | Negative | 3610619 - 3611446 | 29830.4 |
| long-chain-fatty-acid--coa ligase | shim_35970 | P94547 | Negative | 3611485 - 3613137 | 60054.2 |
| 7-alpha-hydroxysteroid dehydrogenase | shim_35980 | Q9GKX2 | Positive | 3613306 - 3614112 | 27753.5 |
| fatty acid oxidation complex subunit alpha | shim_35990 | Q6NYL3 | Positive | 3614134 - 3616221 | 73422.8 |
| acryloyl-coa reductase (nadh) | shim_36000 | P95280 | Positive | 3616226 - 3617413 | 43999.8 |
| acyl-coa dehydrogenase, short-chain specific | shim_36010 | I6YCF5 | Positive | 3617416 - 3618486 | 37646.0 |
| hypothetical protein | shim_36020 | Not Available | Negative | 3618550 - 3618963 | 15746.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
