Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_03270 | Not Available | Positive | 322966 - 323733 | 27495.8 |
| l-threonine dehydratase biosynthetic ilva | shim_03280 | P37946 | Positive | 323772 - 325010 | 44696.2 |
| hpt domain protein | shim_03290 | Not Available | Negative | 325007 - 325330 | 11559.5 |
| transcriptional regulatory protein afsq1 | shim_03300 | Q04942 | Positive | 325492 - 326757 | 46241.1 |
| rna pyrophosphohydrolase | shim_03310 | Not Available | Negative | 326754 - 327191 | 16238.5 |
| 33 kda chaperonin | shim_03320 | Q1QU53 | Positive | 327270 - 328274 | 36249.7 |
| putative nudix hydrolase nudl | shim_03330 | A4WBH1 | Positive | 328252 - 328866 | 22541.0 |
| cca-adding enzyme | shim_03340 | Q8K1J6 | Positive | 328863 - 330023 | 41194.6 |
| putative multidrug export atp-binding/permease protein | shim_03350 | Q57180 | Positive | 330277 - 332118 | 67448.2 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | shim_03360 | Q92RJ3 | Positive | 332155 - 333369 | 43221.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
