Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diguanylate cyclase dosc | shim_35830 | Not Available | Positive | 3598762 - 3599496 | 26804.5 |
| soluble hydrogenase 42 kda subunit | shim_35840 | Not Available | Positive | 3599595 - 3600719 | 40157.9 |
| hypothetical protein | shim_35850 | Not Available | Negative | 3600716 - 3601420 | 25651.1 |
| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase | shim_35860 | Not Available | Negative | 3601424 - 3602635 | 43528.6 |
| hypothetical protein | shim_35870 | Not Available | Negative | 3602710 - 3602889 | 6204.06 |
| haloacid dehalogenase-like hydrolase | shim_35880 | Not Available | Negative | 3603026 - 3603670 | 24118.7 |
| hth-type transcriptional regulator mcbr | shim_35890 | O05494 | Positive | 3603772 - 3604410 | 23580.0 |
| hypothetical protein | shim_35900 | Not Available | Negative | 3604411 - 3604578 | 5980.04 |
| beta-monoglucosyldiacylglycerol synthase | shim_35910 | Not Available | Negative | 3604588 - 3606324 | 65818.9 |
| carbamoyl-phosphate synthase small chain | shim_35920 | Q5LTN6 | Negative | 3606400 - 3607557 | 40852.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
