Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spore cortex-lytic enzyme precursor | shim_35730 | Not Available | Positive | 3590665 - 3591306 | 23444.9 |
| bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase | shim_35740 | Not Available | Positive | 3591455 - 3592387 | 33906.7 |
| dihydropteroate synthase | shim_35750 | P0AC14 | Positive | 3592426 - 3593445 | 35562.7 |
| phosphoglucosamine mutase | shim_35760 | Q1GE79 | Positive | 3593435 - 3594781 | 47438.9 |
| putative dmt superfamily transporter inner membrane protein | shim_35770 | Not Available | Negative | 3594778 - 3595698 | 32043.6 |
| hth-type transcriptional regulator | shim_35780 | Not Available | Positive | 3595797 - 3596111 | 11503.9 |
| hypothetical protein | shim_35790 | Not Available | Positive | 3596108 - 3596560 | 16453.2 |
| ketol-acid reductoisomerase | shim_35800 | Q5LTP7 | Negative | 3596612 - 3597634 | 37001.5 |
| regulatory protein asnc | shim_35810 | Not Available | Positive | 3597777 - 3598232 | 17546.2 |
| regulatory protein asnc | shim_35820 | Not Available | Positive | 3598229 - 3598687 | 16842.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
