Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| caspase domain protein | shim_35630 | Not Available | Positive | 3579361 - 3580080 | 25828.6 |
| beta-glucanase precursor | shim_35640 | P37073 | Negative | 3580075 - 3580818 | 27665.2 |
| hypothetical protein | shim_35650 | Not Available | Positive | 3581032 - 3581307 | 10166.5 |
| hypothetical protein | shim_35660 | Not Available | Positive | 3581304 - 3581519 | 8174.54 |
| hypothetical protein | shim_35670 | Not Available | Positive | 3582427 - 3583065 | 23177.2 |
| hypothetical protein | shim_35680 | Not Available | Positive | 3583145 - 3583327 | 6942.3 |
| hypothetical protein | shim_35690 | Not Available | Positive | 3584711 - 3585301 | 22569.0 |
| hypothetical protein | shim_35700 | Not Available | Positive | 3585417 - 3585599 | 6780.22 |
| glycine--trna ligase beta subunit | shim_35710 | Q1GE74 | Positive | 3585715 - 3587892 | 79229.9 |
| pyruvate, phosphate dikinase | shim_35720 | Q59754 | Positive | 3587974 - 3590514 | 91618.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
