Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative epimerase/dehydratase | shim_35530 | Q0KBD2 | Negative | 3568990 - 3569955 | 34061.7 |
| 2-hydroxy-3-oxopropionate reductase | shim_35540 | P77161 | Negative | 3569952 - 3570830 | 30361.5 |
| l-arabonate dehydratase | shim_35550 | Q9A9Z2 | Positive | 3571020 - 3572816 | 64735.8 |
| glyoxylate/hydroxypyruvate reductase b | shim_35560 | Q9CA90 | Positive | 3572817 - 3573773 | 33562.0 |
| 2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase | shim_35570 | Q15SS0 | Negative | 3573783 - 3574553 | 26604.7 |
| putative zinc-type alcohol dehydrogenase-like protein yjmd | shim_35580 | Q15SS1 | Negative | 3574550 - 3575587 | 36964.5 |
| mandelate racemase | shim_35590 | H2IFX0 | Negative | 3575600 - 3576691 | 39846.3 |
| pyruvate dehydrogenase complex repressor | shim_35600 | Not Available | Positive | 3576884 - 3577600 | 27088.3 |
| 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase | shim_35610 | P09400 | Positive | 3577615 - 3578637 | 37362.9 |
| outer membrane protein a precursor | shim_35620 | Not Available | Positive | 3578735 - 3579343 | 21393.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
