Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_35430 | Not Available | Positive | 3557902 - 3558831 | 34969.5 |
| thiamine biosynthesis lipoprotein apbe precursor | shim_35440 | Not Available | Positive | 3559054 - 3559941 | 30705.8 |
| eama-like transporter family protein | shim_35450 | Not Available | Negative | 3559979 - 3560887 | 32558.0 |
| 2-hydroxy-3-oxopropionate reductase | shim_35460 | Q949M8 | Negative | 3560880 - 3561770 | 30906.2 |
| altronate dehydratase | shim_35470 | Not Available | Negative | 3561842 - 3563344 | 52313.2 |
| sialic acid trap transporter permease protein siat | shim_35480 | Not Available | Negative | 3563357 - 3564985 | 57959.9 |
| tripartite atp-independent periplasmic transporter, dctq component | shim_35490 | Not Available | Negative | 3564985 - 3565857 | 33014.7 |
| putative isomerase yitf | shim_35500 | Q97U96 | Negative | 3565873 - 3567039 | 42958.7 |
| lactate-binding periplasmic protein precursor | shim_35510 | Not Available | Negative | 3567125 - 3568141 | 36621.4 |
| hth-type transcriptional repressor csir | shim_35520 | Not Available | Positive | 3568325 - 3569020 | 26466.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
