Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_35230 | Not Available | Negative | 3535603 - 3536232 | 22597.0 |
| atpase family associated with various cellular activities (aaa) | shim_35240 | Not Available | Positive | 3536256 - 3537263 | 36170.6 |
| hypothetical protein | shim_35250 | Not Available | Positive | 3537260 - 3538132 | 32681.0 |
| hypothetical protein | shim_35260 | Not Available | Positive | 3538129 - 3540885 | 98234.8 |
| hypothetical protein | shim_35270 | Not Available | Positive | 3540882 - 3542924 | 73498.3 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | shim_35280 | Q16D84 | Positive | 3543011 - 3544531 | 52960.6 |
| peptidase family m23 | shim_35290 | Not Available | Positive | 3544528 - 3545676 | 40051.3 |
| putative ctpa-like serine protease | shim_35300 | Q44879 | Positive | 3545680 - 3547014 | 47709.1 |
| rna pyrophosphohydrolase | shim_35310 | Q16BL5 | Positive | 3547781 - 3548263 | 18201.6 |
| Trna-arg | Not Available | Not Available | Positive | 3548351 - 3548427 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
