Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| periplasmic zinc-binding protein troa precursor | shim_35030 | O34385 | Positive | 3510370 - 3511341 | 34885.7 |
| high-affinity zinc uptake system atp-binding protein znuc | shim_35040 | P96117 | Positive | 3511352 - 3512158 | 28927.1 |
| manganese transport system membrane protein mntb | shim_35050 | O35024 | Positive | 3512162 - 3513367 | 41952.1 |
| manganese transport system membrane protein mntb | shim_35060 | Q9KD29 | Positive | 3513364 - 3514290 | 31801.8 |
| putative sulfate transporter | shim_35070 | Q9FY46 | Negative | 3514296 - 3516038 | 61498.0 |
| acetophenone carboxylase gamma subunit | shim_35080 | P97608 | Positive | 3516324 - 3519902 | 126532.0 |
| taurine--pyruvate aminotransferase | shim_35090 | Not Available | Negative | 3519948 - 3521300 | 48391.5 |
| dna mismatch repair protein mutl | shim_35100 | B4RA70 | Positive | 3521452 - 3523341 | 67456.9 |
| dna recombination protein rmuc | shim_35110 | Q9PG89 | Positive | 3523405 - 3524559 | 42273.1 |
| hypothetical protein | shim_35120 | Not Available | Positive | 3524614 - 3525282 | 25239.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
