Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_03170 | Not Available | Positive | 310357 - 310809 | 16022.2 |
| glutamate synthase (nadph) large chain precursor | shim_03180 | Q05755 | Positive | 310806 - 315338 | 163741.0 |
| hypothetical protein | shim_03190 | Not Available | Positive | 315505 - 315870 | 12833.9 |
| penicillin-binding protein 2d | shim_03200 | Q28VR9 | Positive | 315938 - 316663 | 27089.8 |
| maleylpyruvate isomerase | shim_03210 | A0A0H3CDY2 | Positive | 316696 - 317385 | 26575.1 |
| epoxyqueuosine reductase | shim_03220 | F7ZDR3 | Positive | 317476 - 318519 | 38153.2 |
| hypothetical protein | shim_03230 | Q9LZI9 | Positive | 318512 - 319165 | 24796.8 |
| hypothetical protein | shim_03240 | Not Available | Negative | 319298 - 319789 | 17730.3 |
| miniconductance mechanosensitive channel mscm precursor | shim_03250 | Not Available | Negative | 319786 - 321441 | 61042.0 |
| argininosuccinate synthase | shim_03260 | Q16D10 | Negative | 321599 - 322825 | 45381.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
