Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s15 | shim_34830 | Q1GKK2 | Negative | 3488195 - 3488464 | 10438.8 |
| hemolysin, chromosomal | shim_34840 | Not Available | Negative | 3488604 - 3489590 | 32621.3 |
| hypothetical protein | shim_34850 | Not Available | Negative | 3489704 - 3490213 | 19398.9 |
| trna pseudouridine synthase b | shim_34860 | Q5LLT4 | Negative | 3490210 - 3491124 | 32998.0 |
| hypothetical protein | shim_34870 | Not Available | Negative | 3491201 - 3491923 | 26237.2 |
| ribosome-binding factor a | shim_34880 | Q5LLT6 | Negative | 3491923 - 3492345 | 15819.9 |
| 4-hydroxy-tetrahydrodipicolinate reductase | shim_34890 | Q5LLT7 | Positive | 3492417 - 3493238 | 28619.5 |
| glycine betaine/carnitine transport binding protein gbuc precursor | shim_34900 | Not Available | Positive | 3493426 - 3494388 | 34213.5 |
| glycine betaine/carnitine transport atp-binding protein gbua | shim_34910 | Q9RR46 | Positive | 3494395 - 3495465 | 39054.1 |
| glycine betaine transport system permease protein opuab | shim_34920 | P46921 | Positive | 3495462 - 3497528 | 72356.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
