Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_34530 | Not Available | Positive | 3452633 - 3453754 | 42549.7 |
| atpase family associated with various cellular activities (aaa) | shim_34540 | Not Available | Positive | 3453838 - 3455775 | 70430.9 |
| hypothetical protein | shim_34550 | Not Available | Positive | 3455776 - 3456156 | 13561.0 |
| hypothetical protein | shim_34560 | Not Available | Positive | 3456156 - 3456362 | 6797.3 |
| hypothetical protein | shim_34570 | Not Available | Positive | 3456343 - 3456672 | 11763.8 |
| hypothetical protein | shim_34580 | Not Available | Positive | 3456665 - 3458014 | 51021.6 |
| hypothetical protein | shim_34590 | Not Available | Positive | 3458017 - 3458283 | 10272.5 |
| hypothetical protein | shim_34600 | Not Available | Positive | 3458297 - 3458947 | 25220.8 |
| dmso reductase anchor subunit (dmsc) | shim_34610 | D3RNN6 | Negative | 3458948 - 3459820 | 31258.7 |
| tetrathionate reductase subunit b precursor | shim_34620 | D3RNN7 | Negative | 3459820 - 3460581 | 27480.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
