Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| small heat shock protein ibpa | shim_34430 | O69241 | Positive | 3443947 - 3444420 | 17379.4 |
| enterobactin exporter ents | shim_34440 | Not Available | Positive | 3444562 - 3445773 | 42661.5 |
| hypothetical protein | shim_34450 | Not Available | Negative | 3445825 - 3448014 | 78101.6 |
| alpha/beta hydrolase family protein | shim_34460 | Not Available | Positive | 3448202 - 3448984 | 27975.0 |
| peptidase family s58 | shim_34470 | P9WM22 | Negative | 3448997 - 3449968 | 32566.5 |
| organic hydroperoxide resistance protein ohra | shim_34480 | P0A0V4 | Negative | 3450050 - 3450475 | 14372.2 |
| organic hydroperoxide resistance transcriptional regulator | shim_34490 | Q2G0B1 | Positive | 3450597 - 3451049 | 16682.3 |
| hypothetical protein | shim_34500 | Not Available | Negative | 3451055 - 3451162 | 4010.76 |
| hypothetical protein | shim_34510 | Not Available | Positive | 3451198 - 3452274 | 40129.5 |
| hypothetical protein | shim_34520 | Not Available | Positive | 3452307 - 3452636 | 12365.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
