Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-isopropylmalate dehydratase large subunit | shim_34330 | Q5LX06 | Negative | 3433745 - 3435151 | 50598.4 |
| putative mscs family protein.1 precursor | shim_34340 | Q57362 | Positive | 3435414 - 3436823 | 52807.8 |
| ribosomal silencing factor rsfs | shim_34350 | Q5NLX3 | Positive | 3436845 - 3437339 | 18028.5 |
| ribosomal rna large subunit methyltransferase h | shim_34360 | A8LKJ4 | Positive | 3437385 - 3437861 | 16987.7 |
| hypothetical protein | shim_34370 | Not Available | Negative | 3437959 - 3438657 | 25778.7 |
| putative fad-linked oxidoreductase | shim_34380 | P0AEQ0 | Positive | 3438743 - 3440182 | 51442.9 |
| putative fad-linked oxidoreductase | shim_34390 | P52073 | Positive | 3440261 - 3441370 | 37995.8 |
| hypothetical protein | shim_34400 | Not Available | Positive | 3441367 - 3441606 | 8791.39 |
| lactate utilization protein a | shim_34410 | P52074 | Positive | 3441609 - 3442931 | 48216.5 |
| glutamyl endopeptidase precursor | shim_34420 | Not Available | Positive | 3442996 - 3443826 | 29932.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
