Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_34230 | Not Available | Positive | 3424185 - 3424847 | 23838.6 |
| eama-like transporter family protein | shim_34240 | Not Available | Negative | 3424900 - 3425844 | 33897.6 |
| 3-isopropylmalate dehydrogenase | shim_34250 | Q5LWZ5 | Negative | 3425966 - 3427069 | 39459.1 |
| hth-type transcriptional regulator cysl | shim_34260 | Not Available | Negative | 3427128 - 3428024 | 33275.0 |
| hypothetical protein | shim_34270 | Not Available | Positive | 3428113 - 3429024 | 33855.8 |
| hypothetical protein | shim_34280 | Not Available | Negative | 3428991 - 3429917 | 33615.8 |
| hypothetical protein | shim_34290 | Not Available | Negative | 3430022 - 3430855 | 30717.5 |
| hypothetical protein | shim_34300 | Not Available | Positive | 3431283 - 3432494 | 42890.0 |
| hypothetical protein | shim_34310 | Not Available | Negative | 3432653 - 3432985 | 12225.7 |
| 3-isopropylmalate dehydratase small subunit | shim_34320 | Q5LX07 | Negative | 3433140 - 3433745 | 22133.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
