Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain protein | shim_34130 | Not Available | Negative | 3410376 - 3410588 | 8209.73 |
| hypothetical protein | shim_34140 | Not Available | Negative | 3410681 - 3411400 | 27614.2 |
| transposase | shim_34150 | Not Available | Negative | 3411451 - 3412608 | 43424.4 |
| atp-dependent rna helicase dead | shim_34160 | Q9LUW5 | Negative | 3413002 - 3415089 | 74892.3 |
| marr family protein | shim_34170 | Not Available | Positive | 3415357 - 3415842 | 17670.4 |
| multidrug resistance protein mdte precursor | shim_34180 | Not Available | Positive | 3415839 - 3416879 | 37429.6 |
| cobalt-zinc-cadmium resistance protein czca | shim_34190 | A1JKW9 | Positive | 3416891 - 3419947 | 110283.0 |
| putative phospholipid abc transporter permease protein mlae | shim_34200 | P45030 | Positive | 3420119 - 3421258 | 40630.2 |
| putative abc transporter atp-binding protein | shim_34210 | Not Available | Positive | 3421261 - 3422070 | 28778.0 |
| mce related protein | shim_34220 | Not Available | Positive | 3422074 - 3424188 | 73615.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
