Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c1 precursor | shim_33930 | P13627 | Negative | 3390701 - 3391492 | 28494.1 |
| cytochrome b | shim_33940 | P05418 | Negative | 3391507 - 3392829 | 49711.4 |
| ubiquinol-cytochrome c reductase iron-sulfur subunit | shim_33950 | P05417 | Negative | 3392841 - 3393401 | 19918.2 |
| hydrogen peroxide-inducible genes activator | shim_33960 | Not Available | Positive | 3393717 - 3394754 | 37374.1 |
| nadh-quinone oxidoreductase subunit f | shim_33970 | P56913 | Positive | 3394842 - 3396533 | 61135.0 |
| putative formate dehydrogenase | shim_33980 | P61159 | Positive | 3396535 - 3399318 | 100501.0 |
| putative gst-like protein yibf | shim_33990 | Not Available | Negative | 3399523 - 3400137 | 22546.7 |
| protease synthase and sporulation protein pai 2 | shim_34000 | P21341 | Negative | 3400141 - 3400776 | 23248.6 |
| glutaredoxin 2 | shim_34010 | Not Available | Negative | 3400898 - 3401557 | 23946.9 |
| threonylcarbamoyladenosine trna methylthiotransferase mtab | shim_34020 | Q9ZDB6 | Negative | 3401665 - 3402927 | 46254.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
