Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| elongation factor g | shim_03070 | Q160Y3 | Positive | 300014 - 302131 | 77952.8 |
| sulfotransferase family protein | shim_03080 | Not Available | Positive | 302157 - 302873 | 27261.8 |
| 6-hydroxy-3-succinoylpyridine 3-monooxygenase hspa | shim_03090 | Not Available | Positive | 303215 - 303826 | 23148.8 |
| hypothetical protein | shim_03100 | Not Available | Negative | 304094 - 304246 | 5296.54 |
| hypothetical protein | shim_03110 | Not Available | Positive | 304812 - 305843 | 38559.9 |
| Trna-leu | Not Available | Not Available | Positive | 306017 - 306103 | Not Available |
| 3-beta hydroxysteroid dehydrogenase/isomerase family protein | shim_03130 | Q9SK66 | Positive | 306323 - 307300 | 35530.2 |
| undecaprenyl-diphosphatase | shim_03140 | Q28VU8 | Negative | 307352 - 308221 | 31029.9 |
| glutamate synthase (nadph) small chain | shim_03150 | Q05756 | Positive | 308376 - 309812 | 51493.0 |
| glutathione-dependent formaldehyde-activating enzyme | shim_03160 | Not Available | Positive | 309947 - 310360 | 15055.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
