Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-insensitive murein endopeptidase precursor | shim_33830 | P44566 | Negative | 3373935 - 3374849 | 33439.1 |
| vacuole effluxer atg22 like protein | shim_33840 | Not Available | Negative | 3374831 - 3376183 | 48569.7 |
| hypothetical protein | shim_33850 | Not Available | Negative | 3376240 - 3376776 | 20698.0 |
| yggt family protein | shim_33860 | Not Available | Positive | 3376917 - 3377198 | 10607.7 |
| atp-dependent dna helicase recq | shim_33870 | P15043 | Positive | 3377276 - 3379315 | 74347.8 |
| hypothetical protein | shim_33880 | Q16D64 | Positive | 3379340 - 3380113 | 29127.8 |
| signal transduction histidine-protein kinase bara | shim_33890 | P48027 | Negative | 3380098 - 3382293 | 79715.1 |
| hypothetical protein | shim_33900 | P76578 | Positive | 3382440 - 3387881 | 194971.0 |
| penicillin-binding protein 1f | shim_33910 | P76577 | Positive | 3387881 - 3389923 | 73353.3 |
| dinb family protein | shim_33920 | Not Available | Positive | 3390114 - 3390611 | 18597.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
