Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nicotinamidase/pyrazinamidase | shim_33730 | P21369 | Positive | 3363591 - 3364187 | 20943.9 |
| autoinducer 2 sensor kinase/phosphatase luxq | shim_33740 | Q86CZ2 | Positive | 3364269 - 3366524 | 82137.5 |
| nicotinate phosphoribosyltransferase | shim_33750 | B9JYR4 | Positive | 3366592 - 3367884 | 49321.1 |
| alpha/beta hydrolase family protein | shim_33760 | Not Available | Negative | 3367888 - 3368781 | 31691.2 |
| putative hth-type transcriptional regulator yybr | shim_33770 | P9WMG3 | Positive | 3368853 - 3369311 | 17674.5 |
| homoserine kinase | shim_33780 | Not Available | Negative | 3369308 - 3370264 | 34728.2 |
| 5-aminovalerate aminotransferase davt | shim_33790 | Q8BWU8 | Negative | 3370261 - 3371526 | 45366.8 |
| peptidyl-trna hydrolase arfb | shim_33800 | P45388 | Negative | 3371589 - 3372062 | 17852.7 |
| inner membrane protein yhhq | shim_33810 | P37619 | Negative | 3372323 - 3372958 | 22823.6 |
| hypothetical protein | shim_33820 | Not Available | Negative | 3373048 - 3373962 | 34063.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
