Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sn-glycerol-3-phosphate import atp-binding protein ugpc | shim_33630 | Q46ZM0 | Negative | 3352296 - 3353381 | 39255.3 |
| l-arabinose transport system permease protein araq | shim_33640 | O32154 | Negative | 3353385 - 3354326 | 34663.3 |
| lactose transport system permease protein lacf | shim_33650 | O58968 | Negative | 3354319 - 3355251 | 34525.8 |
| putative sugar-binding periplasmic protein precursor | shim_33660 | O06875 | Negative | 3355363 - 3356592 | 42625.9 |
| hth-type transcriptional repressor cytr | shim_33670 | P0ACN9 | Positive | 3356762 - 3357802 | 37436.5 |
| glutamine-binding periplasmic protein precursor | shim_33680 | Not Available | Positive | 3357921 - 3358736 | 28275.7 |
| putative amino-acid permease protein yxen | shim_33690 | Not Available | Positive | 3358738 - 3359574 | 30727.2 |
| glutamine transport atp-binding protein glnq | shim_33700 | P27675 | Positive | 3359574 - 3360305 | 26974.9 |
| assimilatory nitrate reductase catalytic subunit | shim_33710 | P42434 | Positive | 3360448 - 3362541 | 75198.8 |
| putative lipid kinase yegs | shim_33720 | Q1QUK4 | Negative | 3362542 - 3363435 | 31756.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
