Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_33530 | Not Available | Positive | 3340974 - 3342908 | 74172.8 |
| 30s ribosomal protein s21 | shim_33540 | Not Available | Positive | 3343330 - 3343536 | 8075.01 |
| l-threonine 3-dehydrogenase | shim_33550 | Q5LN53 | Negative | 3343867 - 3344919 | 37657.7 |
| 2-amino-3-ketobutyrate coenzyme a ligase | shim_33560 | P0AB78 | Negative | 3344916 - 3346103 | 42800.5 |
| hth-type transcriptional regulator puur | shim_33570 | P77626 | Negative | 3346286 - 3346843 | 19585.1 |
| beta-ketothiolase bktb | shim_33580 | Q0KBP1 | Positive | 3346979 - 3348154 | 40152.4 |
| glucose--fructose oxidoreductase precursor | shim_33590 | P55480 | Negative | 3348209 - 3349333 | 39855.0 |
| inosose dehydratase | shim_33600 | Not Available | Negative | 3349333 - 3350391 | 39359.3 |
| l-arabinose 1-dehydrogenase | shim_33610 | Not Available | Negative | 3350391 - 3351521 | 40073.5 |
| xylose isomerase-like tim barrel | shim_33620 | Not Available | Negative | 3351525 - 3352271 | 26820.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
