Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| motility protein b | shim_33430 | P0AF07 | Negative | 3327965 - 3328783 | 30003.2 |
| acyltransferase | shim_33440 | Not Available | Negative | 3328868 - 3329611 | 26954.1 |
| translocation and assembly module tama precursor | shim_33450 | Not Available | Positive | 3329796 - 3331634 | 66009.7 |
| translocation and assembly module tamb | shim_33460 | Not Available | Positive | 3331634 - 3335041 | 117633.0 |
| hth-type transcriptional regulator beti | shim_33470 | Not Available | Negative | 3335035 - 3335592 | 20874.9 |
| regulatory protein soxs | shim_33480 | Not Available | Negative | 3335716 - 3336147 | 15637.9 |
| 1-deoxy-11-beta-hydroxypentalenate dehydrogenase | shim_33490 | Q96NR8 | Positive | 3336309 - 3337253 | 33963.7 |
| cysteine synthase | shim_33500 | O01592 | Negative | 3337272 - 3338228 | 33028.4 |
| putative mfs-type transporter yhjx | shim_33510 | P37662 | Positive | 3338538 - 3339770 | 42603.1 |
| hypothetical protein | shim_33520 | Not Available | Positive | 3340347 - 3340811 | 17642.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
