Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_33330 | Not Available | Negative | 3318250 - 3318801 | 20266.0 |
| flagellar flil protein | shim_33340 | Not Available | Negative | 3318816 - 3319310 | 17633.4 |
| flagellar m-ring protein | shim_33350 | Q8FUS3 | Positive | 3319385 - 3321076 | 59214.1 |
| hypothetical protein | shim_33360 | Not Available | Positive | 3321073 - 3321669 | 21495.8 |
| flagellar motor switch protein | shim_33370 | Q03593 | Positive | 3321662 - 3321943 | 9904.93 |
| flagellar biosynthetic protein flip precursor | shim_33380 | Q44344 | Positive | 3321940 - 3322677 | 26378.4 |
| flagellar p-ring protein precursor | shim_33390 | Q5LWZ2 | Negative | 3322953 - 3324065 | 38620.8 |
| flagellar hook-associated protein flgl | shim_33400 | Not Available | Negative | 3324065 - 3325072 | 35247.5 |
| flagellar hook-associated protein 1 | shim_33410 | P33235 | Negative | 3325076 - 3326524 | 50161.6 |
| flagellar hook protein flge | shim_33420 | Q8FUS9 | Negative | 3326564 - 3327871 | 44494.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
