Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar l-ring protein precursor | shim_33230 | Q5LWX7 | Positive | 3307803 - 3308534 | 26340.5 |
| hypothetical protein | shim_33240 | Not Available | Positive | 3308547 - 3309056 | 18121.0 |
| hypothetical protein | shim_33250 | Not Available | Negative | 3309132 - 3309554 | 16112.3 |
| flagellar biosynthetic protein flhb | shim_33260 | P35538 | Negative | 3309551 - 3310639 | 39844.8 |
| flagellar biosynthesis protein flir | shim_33270 | Not Available | Negative | 3310636 - 3311409 | 27136.2 |
| flagellar biosynthesis protein flha | shim_33280 | Q03845 | Negative | 3311406 - 3313493 | 74839.6 |
| transglycosylase slt domain protein | shim_33290 | Not Available | Negative | 3313497 - 3314300 | 29670.6 |
| hypothetical protein | shim_33300 | Not Available | Negative | 3314368 - 3316653 | 82032.4 |
| motility protein a | shim_33310 | P97215 | Negative | 3316650 - 3317519 | 31316.6 |
| hypothetical protein | shim_33320 | Not Available | Negative | 3317576 - 3318220 | 23215.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
