Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putrescine transport system permease protein poth | shim_33030 | P31135 | Positive | 3293130 - 3294020 | 33479.9 |
| inner membrane abc transporter permease protein ydcv | shim_33040 | P0AFL2 | Positive | 3294017 - 3294835 | 29631.8 |
| gamma-glutamylputrescine oxidoreductase | shim_33050 | Not Available | Positive | 3294832 - 3296157 | 47894.0 |
| phosphotransferase enzyme family protein | shim_33060 | Not Available | Negative | 3296127 - 3296930 | 28932.4 |
| basal-body rod modification protein flgd | shim_33070 | Not Available | Negative | 3297062 - 3297754 | 24124.6 |
| flagellar hook-length control protein flik | shim_33080 | Not Available | Negative | 3297763 - 3299145 | 48493.3 |
| chemotactic signal-response protein chel | shim_33090 | Not Available | Positive | 3299259 - 3299564 | 10595.4 |
| flgn protein | shim_33100 | Not Available | Positive | 3299551 - 3299910 | 13568.1 |
| flagellin | shim_33110 | Q03841 | Positive | 3300120 - 3301328 | 40493.8 |
| flagellar biosynthesis regulatory protein flaf | shim_33120 | Not Available | Positive | 3301431 - 3301805 | 13566.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
