Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease r | shim_32930 | P21499 | Positive | 3282486 - 3284750 | 83337.3 |
| hypothetical protein | shim_32940 | Not Available | Negative | 3284786 - 3285526 | 26748.2 |
| hth domain protein | shim_32950 | Not Available | Positive | 3285610 - 3286314 | 26279.9 |
| membrane-bound lytic murein transglycosylase b precursor | shim_32960 | Not Available | Positive | 3286404 - 3287741 | 48197.4 |
| putative l,d-transpeptidase ynhg precursor | shim_32970 | P54539 | Negative | 3287742 - 3288323 | 21570.9 |
| hypothetical protein | shim_32980 | Not Available | Positive | 3288403 - 3288513 | 3977.73 |
| omega-amino acid--pyruvate aminotransferase | shim_32990 | Q9I6J2 | Negative | 3288504 - 3289892 | 50581.6 |
| hth-type transcriptional regulator mcbr | shim_33000 | Not Available | Negative | 3289970 - 3290686 | 25991.3 |
| putrescine-binding periplasmic protein precursor | shim_33010 | Q02UB7 | Positive | 3290833 - 3291918 | 39164.2 |
| spermidine/putrescine import atp-binding protein pota | shim_33020 | P31134 | Positive | 3292002 - 3293126 | 41593.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
