Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l10 | shim_02970 | Q1GK51 | Positive | 285241 - 285759 | 17810.3 |
| 50s ribosomal protein l7/l12 | shim_02980 | Q28UX8 | Positive | 285832 - 286209 | 12767.3 |
| hypothetical protein | shim_02990 | Not Available | Negative | 286273 - 287247 | 35539.4 |
| dna-directed rna polymerase subunit beta | shim_03000 | Q160X7 | Positive | 287788 - 291924 | 153193.0 |
| dna-directed rna polymerase subunit beta' | shim_03010 | Q5LMQ6 | Positive | 291977 - 296224 | 156740.0 |
| hypothetical protein | shim_03020 | Not Available | Negative | 296367 - 296822 | 17215.3 |
| eama-like transporter family protein | shim_03030 | Not Available | Positive | 297062 - 297949 | 31742.8 |
| hypothetical protein | shim_03040 | Not Available | Negative | 297925 - 298725 | 30318.4 |
| 30s ribosomal protein s12 | shim_03050 | Q5LMR2 | Positive | 299135 - 299506 | 14180.5 |
| 30s ribosomal protein s7 | shim_03060 | Q5LMR3 | Positive | 299522 - 299992 | 17917.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
