Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sn-glycerol-3-phosphate import atp-binding protein ugpc | shim_32830 | P55604 | Positive | 3272554 - 3273642 | 39291.8 |
| mandelate racemase | shim_32840 | Not Available | Positive | 3273646 - 3274755 | 40111.2 |
| l-rhamnose mutarotase | shim_32850 | Not Available | Positive | 3274752 - 3275084 | 12933.4 |
| 2-keto-3-deoxy-l-fuconate dehydrogenase | shim_32860 | Q3T046 | Positive | 3275086 - 3275838 | 25926.0 |
| ureidoglycolate lyase | shim_32870 | A9ALD1 | Positive | 3275859 - 3276701 | 29806.5 |
| l-fuconate dehydratase | shim_32880 | Q8P3K2 | Positive | 3276701 - 3277990 | 47862.3 |
| pyridoxal 4-dehydrogenase | shim_32890 | Q52472 | Positive | 3278069 - 3279037 | 34606.2 |
| hth-type transcriptional regulator dmlr | shim_32900 | Q0TD46 | Negative | 3279225 - 3280127 | 32563.3 |
| d-threo-3-hydroxyaspartate dehydratase | shim_32910 | B2DFG5 | Positive | 3280220 - 3281347 | 40150.3 |
| l-lysine cyclodeaminase | shim_32920 | A1B8Z0 | Positive | 3281358 - 3282293 | 32437.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
