Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| altronate dehydratase | shim_32730 | Not Available | Positive | 3263701 - 3264000 | 10745.0 |
| (2r)-sulfolactate sulfo-lyase subunit beta | shim_32740 | P42240 | Positive | 3264004 - 3265200 | 41578.7 |
| pyridoxal 4-dehydrogenase | shim_32750 | Q76KC2 | Positive | 3265210 - 3266175 | 35117.8 |
| amidohydrolase | shim_32760 | Not Available | Positive | 3266172 - 3267032 | 31552.7 |
| l-rhamnose mutarotase | shim_32770 | A5G2T9 | Positive | 3267026 - 3267358 | 13053.6 |
| amidohydrolase | shim_32780 | Not Available | Negative | 3267547 - 3268374 | 31230.2 |
| transcriptional regulator kdgr | shim_32790 | Not Available | Negative | 3268412 - 3269209 | 28924.7 |
| putative abc transporter-binding protein precursor | shim_32800 | Not Available | Positive | 3269392 - 3270714 | 47246.6 |
| trehalose transport system permease protein suga | shim_32810 | P55602 | Positive | 3270786 - 3271679 | 33684.5 |
| inner membrane abc transporter permease protein ycjp | shim_32820 | P77716 | Positive | 3271685 - 3272548 | 31773.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
