Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative n-acetyltransferase yjcf | shim_32630 | Not Available | Positive | 3255753 - 3256175 | 15171.0 |
| hypothetical protein | shim_32640 | Not Available | Positive | 3256172 - 3256783 | 22313.1 |
| hypothetical protein | shim_32650 | Not Available | Negative | 3256692 - 3257207 | 19557.0 |
| ribose import atp-binding protein rbsa | shim_32660 | Q9F9B0 | Positive | 3257415 - 3258194 | 27870.1 |
| ribose transport system permease protein rbsc | shim_32670 | P44736 | Positive | 3258196 - 3259188 | 34783.5 |
| d-allose-binding periplasmic protein precursor | shim_32680 | Not Available | Positive | 3259290 - 3260201 | 31282.8 |
| putative zinc-type alcohol dehydrogenase-like protein yjmd | shim_32690 | Q57517 | Positive | 3260273 - 3261307 | 36566.0 |
| 3-oxoacyl-(acyl-carrier-protein) reductase fabg | shim_32700 | Not Available | Positive | 3261300 - 3262079 | 26934.4 |
| 4-hydroxy-4-methyl-2-oxoglutarate aldolase | shim_32710 | Q48806 | Positive | 3262091 - 3262762 | 24362.4 |
| putative hth-type transcriptional regulator yjjm | shim_32720 | Not Available | Positive | 3262802 - 3263704 | 34332.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
