Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_32530 | Not Available | Positive | 3246446 - 3246829 | 13420.5 |
| hypothetical protein | shim_32540 | Not Available | Positive | 3246931 - 3247140 | 7522.13 |
| putative lysine decarboxylase | shim_32550 | Not Available | Negative | 3247216 - 3248049 | 30855.7 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | shim_32560 | A8LJS9 | Positive | 3248231 - 3249058 | 29371.1 |
| glutamine-binding periplasmic protein precursor | shim_32570 | Not Available | Negative | 3249059 - 3250168 | 40019.2 |
| hypothetical protein | shim_32580 | Not Available | Negative | 3250272 - 3250814 | 19709.2 |
| hypothetical protein | shim_32590 | Not Available | Positive | 3251249 - 3251626 | 13657.8 |
| hypothetical protein | shim_32600 | Not Available | Negative | 3251628 - 3252722 | 39719.2 |
| hypothetical protein | shim_32610 | Not Available | Negative | 3252733 - 3254301 | 55039.1 |
| succinyl-diaminopimelate desuccinylase | shim_32620 | Q1GC88 | Positive | 3254611 - 3255756 | 40285.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
